Resolved Windows Security & Microsoft Security don't agree with each other

I just went through the malware section on this site, and my malware is gone. Unfortunately, there is a bit of a glitch after that process. Windows Security Center now keeps telling me Virus Protection is not found, yet Microsoft Security Essentials tells me my Real-time protection is On. I've followed the steps on this page, with no results: http://answers.microsoft.com/en-us/...ials-and/c3bef63f-6fa5-4477-8591-40b3af103aca
I've run a scan, removed the repository and reduced the number of programs at startup. I can post a list of what runs at startup, if that might help. Let me know what suggestions you may have.

 

Here is what runs at startup:

Yes HKCU:Run ctfmon.exe Microsoft Corporation D:\WINDOWS\system32\ctfmon.exe
No HKCU:Run ctfmon.exe Microsoft Corporation D:\WINDOWS\system32\ctfmon.exe
Yes HKCU:Run IDMan Tonec Inc. E:\Program Files\Internet Download Manager\IDMan.exe /onboot
No HKCU:Run ISUSPM Acresso Corporation D:\Documents and Settings\All Users\Application Data\FLEXnet\Connect\11\ISUSPM.exe -scheduler
No HKCU:Run NBJ Ahead Software AG "D:\Program Files\Ahead\Nero BackItUp\NBJ.exe "
Yes HKCU:Run SandboxieControl Sandboxie Holdings, LLC "E:\Program Files\Sandboxie\SbieCtrl.exe "
Yes HKCU:Run WMPNSCFG Microsoft Corporation D:\Program Files\Windows Media Player\WMPNSCFG.exe
Yes HKLM:Run 36X Raid Configurer Gigabyte Technology Corp. D:\WINDOWS\System32\xRaidSetup.exe boot
No HKLM:Run Acrobat Assistant 8.0 Adobe Systems Inc. "E:\Program Files\Adobe\Acrobat 8.0\Acrobat\Acrotray.exe "
Yes HKLM:Run Acronis Scheduler2 Service Acronis "D:\Program Files\Common Files\Acronis\Schedule2\schedhlp.exe "
Yes HKLM:Run adm_tray.exe Acronis E:\Program Files\Acronis\DriveMonitor\adm_tray.exe
No HKLM:Run Adobe ARM Adobe Systems Incorporated "D:\Program Files\Common Files\Adobe\ARM\1.0\AdobeARM.exe "
No HKLM:Run Alcmtr Realtek Semiconductor Corp. ALCMTR.EXE
Yes HKLM:Run APSDaemon Apple Inc. "D:\Program Files\Common Files\Apple\Apple Application Support\APSDaemon.exe "
No HKLM:Run BCU "D:\Program Files\DeviceVM\Browser Configuration Utility\BCU.exe "
Yes HKLM:Run BrStsMon00 Brother Industries, Ltd. D:\Program Files\Browny02\Brother\BrStMonW.exe /AUTORUN
Yes HKLM:Run ControlCenter4 Brother Industries, Ltd. D:\Program Files\ControlCenter4\BrCcBoot.exe /autorun
No HKLM:Run DivXMediaServer DivX, LLC E:\Program Files\DivX\DivX Media Server\DivXMediaServer.exe
No HKLM:Run DivXUpdate DivX, LLC "D:\Program Files\DivX\DivX Update\DivXUpdate.exe" /CHECKNOW
No HKLM:Run Eraser The Eraser Project "E:\PROGRA~1\Eraser\Eraser.exe" --atRestart
Yes HKLM:Run hplampc Hewlett-Packard D:\WINDOWS\system32\hplampc.exe
No HKLM:Run IndexSearch Nuance Communications, Inc. "D:\Program Files\Nuance\PaperPort\IndexSearch.exe "
Yes HKLM:Run JMB36X IDE Setup D:\WINDOWS\RaidTool\xInsIDE.exe
Yes HKLM:Run MSC Microsoft Corporation "D:\Program Files\Microsoft Security Client\msseces.exe" -hide -runkey
Yes HKLM:Run NUSB3MON NEC Electronics Corporation "C:\Program Files\NEC Electronics\USB 3.0 Host Controller Driver\Application\nusb3mon.exe "
Yes HKLM:Run NvCplDaemon Microsoft Corporation RUNDLL32.EXE D:\WINDOWS\system32\NvCpl.dll,NvStartup
Yes HKLM:Run NvMediaCenter Microsoft Corporation RUNDLL32.EXE D:\WINDOWS\system32\NvMcTray.dll,NvTaskbarInit
Yes HKLM:Run nwiz NVIDIA Corporation D:\Program Files\NVIDIA Corporation\nView\nwiz.exe /installquiet
No HKLM:Run PaperPort PTD Nuance Communications, Inc. "D:\Program Files\Nuance\PaperPort\pptd40nt.exe "
No HKLM:Run PDF5 Registry Controller Nuance Communications, Inc. D:\Program Files\Nuance\PDF Viewer Plus\RegistryController.exe
No HKLM:Run PDFHook Nuance Communications, Inc. D:\Program Files\Nuance\PDF Viewer Plus\pdfpro5hook.exe
No HKLM:Run PPort12reminder Nuance Communications, Inc. "D:\Program Files\Nuance\PaperPort\Ereg\Ereg.exe" -r "D:\Documents and Settings\All Users\Application Data\ScanSoft\PaperPort\12\Config\Ereg\Ereg.ini "
No HKLM:Run QuickTime Task Apple Inc. "E:\Program Files\QuickTime\qttask.exe" -atboottime
No Startup Common MailWasherPro.lnk Firetrust D:\PROGRA~1\FIRETR~1\MAILWA~1\MAILWA~1.EXE
No Startup Common Secunia PSI Tray.lnk Secunia D:\PROGRA~1\Secunia\PSI\psi_tray.exe
No Startup User Dropbox.lnk Dropbox, Inc. D:\DOCUME~1\Owner\APPLIC~1\Dropbox\bin\Dropbox.exe
Yes Startup User Shortcut to speedfan.lnk Almico Software (www.almico.com) E:\Program Files\SpeedFan\speedfan.exe

Yes Extension Diagnose Connection Problems... Microsoft Corporation %windir%\Network Diagnostic\xpnetdiag.exe
Yes Extension Messenger Microsoft Corporation D:\Program Files\Messenger\msmsgs.exe
Yes Extension Research Microsoft Corporation E:\PROGRA~1\MICROS~1\Office12\REFIEBAR.DLL
Yes Helper Adobe PDF Conversion Toolbar Helper Adobe Systems Incorporated E:\Program Files\Adobe\Acrobat 8.0\Acrobat\AcroIEFavClient.dll
Yes Helper Adobe PDF Reader Link Helper Adobe Systems Incorporated D:\Program Files\Common Files\Adobe\Acrobat\ActiveX\AcroIEHelper.dll
Yes Helper DivX Plus Web Player HTML5 <video> DivX, LLC E:\Program Files\DivX\DivX Plus Web Player\ie\DivXHTML5\DivXHTML5.dll
Yes Helper IDM integration (IDMIEHlprObj Class) Internet Download Manager, Tonec Inc. E:\Program Files\Internet Download Manager\IDMIECC.dll
Yes Helper PlusIEEventHelper Class Zeon Corporation D:\Program Files\Nuance\PDF Viewer Plus\Bin\PlusIEContextMenu.dll
Yes Toolbar Adobe PDF Adobe Systems Incorporated E:\Program Files\Adobe\Acrobat 8.0\Acrobat\AcroIEFavClient.dll

Yes Extension Adblock Plus 2.3.2 Wladimir Palant default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{d10d0bf8-f5b5-c8b4-a8b2-2b9879e08c5d}.xpi
Yes Extension DivX Plus Web Player HTML5 <video> 2.1.2.182 © 2000-2013, DivX LLC. DivX and associated logos are trademarks of Rovi. All rights reserved. default-1368980305000 Firefox 23.0 E:\Program Files\DivX\DivX Plus Web Player\firefox\DivXHTML5
Yes Extension Element Hiding Helper for Adblock Plus 1.2.3 Wladimir Palant default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\elemhidehelper@adblockplus.org.xpi
Yes Extension IDM CC 7.3.57 Internet Download Manager, Tonec Inc. default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\IDM\idmmzcc5
Yes Extension IE Tab 2 (FF 3.6+) 4.12.22.2 Hong Jen Yee (PCMan) default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{1BC9BA34-1EED-42ca-A505-6D2F1A935BBB}
No Extension Microsoft .NET Framework Assistant 0.0.0 Microsoft default-1368980305000 Firefox 23.0 D:\WINDOWS\Microsoft.NET\Framework\v3.5\Windows Presentation Foundation\DotNetAssistantExtension
No Extension Microsoft .NET Framework Assistant 1.3.1 Microsoft default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{20a82645-c095-46ed-80e3-08825760534b}.xpi
Yes Extension Qualys BrowserCheck 1.7.15.1 Qualys, Inc. default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{7D2FB79E-E58C-4DB5-A36F-AC1C73967F4D}
Yes Extension TinEye Reverse Image Search 1.1 Martine Vong default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\tineye@ideeinc.com.xpi
Yes Extension WOT 20130402 WOT Services Oy default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{a0d7ccb3-214d-498b-b4aa-0e8fda9a7bf7}
Yes Plugin Adobe Acrobat 11.0.3.37 Adobe Systems Inc. default-1368980305000 Firefox 23.0 D:\Program Files\Adobe\Reader 11.0\Reader\AIR\nppdf32.dll
No Plugin Coupons Inc., Coupon Printer Manager 4.0.2.0 Coupons, Inc. default-1368980305000 Firefox 23.0 D:\Program Files\Mozilla Firefox\browser\plugins\npMozCouponPrinter.dll
Yes Plugin DivX Plus Web Player 2.4.0.368 DivX, LLC default-1368980305000 Firefox 23.0 E:\Program Files\DivX\DivX Plus Web Player\npdivx32.dll
Yes Plugin DivX VOD Helper Plug-in 1.1.0.6 DivX, LLC. default-1368980305000 Firefox 23.0 E:\Program Files\DivX\DivX OVS Helper\npovshelper.dll
Yes Plugin DivX Web Player 1.5.0.52 DivX,Inc. default-1368980305000 Firefox 23.0 E:\Program Files\DivX\DivX Web Player\npdivx32.dll
No Plugin Foxit Reader Plugin for Mozilla 2.2.3.402 Foxit Corporation default-1368980305000 Firefox 23.0 E:\Program Files\Foxit Software\Foxit Reader\plugins\npFoxitReaderPlugin.dll
Yes Plugin Google Update 1.3.21.153 Google Inc. default-1368980305000 Firefox 23.0 D:\Program Files\Google\Update\1.3.21.153\npGoogleUpdate3.dll
Yes Plugin IE Tab Plug-in 2.2.0.1 ietab.mozdev.org default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{1BC9BA34-1EED-42ca-A505-6D2F1A935BBB}\plugins\npietab2.dll
Yes Plugin Java Deployment Toolkit 7.0.250.16 10.25.2.16 Oracle Corporation default-1368980305000 Firefox 23.0 D:\WINDOWS\system32\npDeployJava1.dll
Yes Plugin Java(TM) Platform SE 7 U25 10.25.2.16 Oracle Corporation default-1368980305000 Firefox 23.0 D:\Program Files\Java\jre7\bin\plugin2\npjp2.dll
Yes Plugin Microsoft® DRM 9.0.0.4503 Microsoft Corporation default-1368980305000 Firefox 23.0 D:\Program Files\Windows Media Player\npdrmv2.dll
Yes Plugin Microsoft® DRM 9.0.0.4503 Microsoft Corporation default-1368980305000 Firefox 23.0 D:\Program Files\Windows Media Player\npwmsdrm.dll
Yes Plugin Microsoft® Windows Media Services 4.1.0.3917 Microsoft Corporation default-1368980305000 Firefox 23.0 D:\WINDOWS\system32\npwmsdrm.dll
Yes Plugin Qualys BrowserCheck Plugin 1.7.15.1 Qualys, Inc. default-1368980305000 Firefox 23.0 D:\Documents and Settings\Owner\Application Data\Mozilla\Firefox\Profiles\aznaz484.default-1368980305000\extensions\{7D2FB79E-E58C-4DB5-A36F-AC1C73967F4D}\plugins\npqbc.dll
Yes Plugin QuickTime Plug-in 7.7.4 7.7.4.0 Apple Inc. default-1368980305000 Firefox 23.0 E:\Program Files\QuickTime\Plugins\npqtplugin5.dll
No Plugin Shockwave Flash 11.8.800.94 Adobe Systems Incorporated default-1368980305000 Firefox 23.0 D:\WINDOWS\system32\Macromed\Flash\NPSWF32_11_8_800_94.dll
No Plugin Shockwave Flash 9.0.45.0 Adobe Systems Incorporated default-1368980305000 Firefox 23.0 D:\WINDOWS\system32\NPSWF32.dll
Yes Plugin Shockwave for Director 12.0.3.133 Adobe Systems, Inc. default-1368980305000 Firefox 23.0 D:\WINDOWS\system32\Adobe\Director\np32dsw_1203133.dll
Yes Plugin VLC Web Plugin 2.0.6.0 VideoLAN default-1368980305000 Firefox 23.0 E:\Program Files\VideoLAN\VLC\npvlc.dll
Yes Plugin Windows Media Player Plug-in Dynamic Link Library 3.0.2.629 Microsoft Corporation (written by Digital Renaissance Inc.) default-1368980305000 Firefox 23.0 D:\Program Files\Windows Media Player\npdsplay.dll
Yes Plugin Windows Presentation Foundation 3.5.30729.1 Microsoft Corporation default-1368980305000 Firefox 23.0 D:\WINDOWS\Microsoft.NET\Framework\v3.5\Windows Presentation Foundation\NPWPF.dll

Yes App Gmail 7 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\pjkljhegncpnkpknbcohdijeoejaedia\7_0
Yes App Google Drive 6.3 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\apdfllckaahabafndbhieahigkjlhalf\6.3_0
Yes App Google Search 0.0.0.20 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\coobgpohoikkiipiblmjeljniedjpjpf\0.0.0.20_0
Yes App YouTube 4.2.6 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\blpcfgokakmgnkcojhhkbfbldkacnbeo\4.2.6_0
Yes Extension Adblock Plus 1.5.3 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\cfhdojbkjhnklbpkdaibdccddilifddb\1.5.3_0
Yes Extension Google Docs 0.5 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\aohghmighlieiainnegkcijnfilokake\0.5_0
Yes Extension IDM Integration Module 6.17.7 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\jeaohhlajejodfjadcponpnjgkiikocn\6.17.7_0
Yes Extension NotScripts 0.9.6 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\odjhifogjcknibkahlpidmdajjpkkcfn\0.9.6_0
Yes Extension WOT 1.4.13 First user D:\Documents and Settings\Owner\Local Settings\Application Data\Google\Chrome\User Data\Default\Extensions\bhmmomiinigofkjcapegjjndpbikblnp\1.4.13_0

No Task Adobe Flash Player Updater Adobe Systems Incorporated D:\WINDOWS\system32\Macromed\Flash\FlashPlayerUpdateService.exe
No Task GoogleUpdateTaskMachineCore Google Inc. D:\Program Files\Google\Update\GoogleUpdate.exe /c
No Task GoogleUpdateTaskMachineUA Google Inc. D:\Program Files\Google\Update\GoogleUpdate.exe /ua /installsource scheduler
Yes Task Microsoft Antimalware Scheduled Scan Microsoft Corporation D:\Program Files\Microsoft Security Client\MpCmdRun.exe Scan -ScheduleJob -RestrictPrivileges
Yes Task MpIdleTask Microsoft Corporation D:\Program Files\Microsoft Security Client\MpCmdRun.exe -IdleTask -TaskName MpIdleTask

No Directory 7-Zip Igor Pavlov D:\Program Files\7-Zip\7-zip.dll
No Directory Add to VLC media player's Playlist VideoLAN "E:\Program Files\VideoLAN\VLC\vlc.exe" --started-from-file --playlist-enqueue "%1 "
No Directory Adobe.Acrobat.ContextMenu Adobe Systems Inc. E:\Program Files\Adobe\Acrobat 8.0\Acrobat Elements\ContextMenu.dll
No Directory DropboxExt Dropbox, Inc. D:\Documents and Settings\Owner\Application Data\Dropbox\bin\DropboxExt.19.dll
No Directory Eraser The Eraser Project "E:\PROGRA~1\Eraser\ERASER~3.DLL "
No Directory MBAMShlExt Malwarebytes Corporation E:\Program Files\Malwarebytes' Anti-Malware\mbamext.dll
No Directory Play with VLC media player VideoLAN "E:\Program Files\VideoLAN\VLC\vlc.exe" --started-from-file --no-playlist-enqueue "%1 "
Yes Directory Run Sandboxed Sandboxie Holdings, LLC "E:\Program Files\Sandboxie\Start.exe" /box:__ask__ Explorer.exe "%1 "
No Directory StuffIt11ContextMenuHandler Smith Micro Software, Inc. E:\Program Files\Smith Micro\StuffIt11\SxShellExt.dll
No Drive Eraser The Eraser Project "E:\PROGRA~1\Eraser\ERASER~3.DLL "
No Drive PartitionMagic 8.0 PowerQuest Corporation E:\Program Files\PowerQuest\PartitionMagic 8.0\PMAGIC.EXE
No File 7-Zip Igor Pavlov D:\Program Files\7-Zip\7-zip.dll
No File Adobe.Acrobat.ContextMenu Adobe Systems Inc. E:\Program Files\Adobe\Acrobat 8.0\Acrobat Elements\ContextMenu.dll
No File DropboxExt Dropbox, Inc. D:\Documents and Settings\Owner\Application Data\Dropbox\bin\DropboxExt.19.dll
No File Eraser The Eraser Project "E:\PROGRA~1\Eraser\ERASER~3.DLL "
No File Foxit_ConvertToPDF_Reader Foxit Corporation E:\Program Files\Foxit Software\Foxit Reader\plugins\ConvertToPDFShellExtension_x86.dll
No File MBAMShlExt Malwarebytes Corporation E:\Program Files\Malwarebytes' Anti-Malware\mbamext.dll
No File StuffIt11ContextMenuHandler Smith Micro Software, Inc. E:\Program Files\Smith Micro\StuffIt11\SxShellExt.dll

 

Steve, no matter how many times I told WSC to stop tattling, it was fruitless. I guess I'll have to work on being more convincing.

Pete, reinstalling MSE fixed the problem. Thanks... issue resolved.